eppendorf n a thermal mixer (Eppendorf AG)
99
Structured Review
Eppendorf AG
eppendorf n a thermal mixer
Eppendorf N A Thermal Mixer, supplied by Eppendorf AG, used in various techniques. Bioz Stars score: 99/100, based on 204617 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/thermal+mixer/Eppendorf/pm42784455-98-156-156
Average 99 stars, based on 204617 article reviews
Eppendorf N A Thermal Mixer, supplied by Eppendorf AG, used in various techniques. Bioz Stars score: 99/100, based on 204617 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/thermal+mixer/Eppendorf/pm42784455-98-156-156
Average 99 stars, based on 204617 article reviews
eppendorf n a thermal mixer - by Bioz Stars,
2026-10
99/100 stars
Images
Related Articles
Expressing:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Plasmid Preparation:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Sterility:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Agarose Gel Electrophoresis:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Gel Extraction:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Nucleic Acid Electrophoresis:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Spectrophotometry:Article Title: Plasmid Library Construction From Genomic DNA. Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt-end restriction site at the multi-cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF-water, NEB, cat. no B1500) Blunt-end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522-1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411-050) Article Title: Plasmid Library Construction From Genomic DNA Article Snippet: .. Protein expression plasmid vector of your choice containing a blunt‐end restriction site at the multi‐cloning site (see protocol introduction) Midiprep Plasmid DNA kit (Qiagen Plasmid Midi Kit 100]; Qiagen, cat. no. 12145) Nuclease free water (NF‐water, NEB, cat. no B1500) Blunt‐end restriction enzyme: e.g., SmaI (NEB, cat. no. R0141S) Sterile LB liquid medium (Thermo Fisher, cat. no. L3522‐1KG) 10× CutSmart Buffer (NEB, cat. no B6004) Alkaline phosphatase (Quick CIP or rSAP, NEB, cat. no. M0525S or M0371S) 0.7% fresh agarose gel (SeaKem LE Agarose; Lonza, cat. no. 50004) AccuGENE 5× TBE Buffer (Lonza, cat. no. 50836) Monarch DNA Gel Extraction Kit (NEB, cat. no. T1020S) 1× dsDNA BR working solution (Invitrogen, cat. no. Q33262) Qubit 1× dsDNA BR Standards #1 and #2 (Invitrogen, cat. no. Q33263) Gel box and gel electrophoresis apparatus for agarose gel Razor blade (VWR, cat. no. 55411‐050) Solubility:Article Title: Efficacy of sulfonamides targeting malic enzyme in an animal model of Chagas disease Article Snippet: Six images per well were acquired using the Operetta system (PerkinElmer) and analyzed with Columbus software to quantify infected cells (≥3 cytoplasmic parasite spots). .. For the solubility assay, the solutions were maintained at 25 °C ( Incubation:Article Title: Efficacy of sulfonamides targeting malic enzyme in an animal model of Chagas disease Article Snippet: Six images per well were acquired using the Operetta system (PerkinElmer) and analyzed with Columbus software to quantify infected cells (≥3 cytoplasmic parasite spots). .. For the solubility assay, the solutions were maintained at 25 °C ( High Performance Liquid Chromatography:Article Title: Efficacy of sulfonamides targeting malic enzyme in an animal model of Chagas disease Article Snippet: Six images per well were acquired using the Operetta system (PerkinElmer) and analyzed with Columbus software to quantify infected cells (≥3 cytoplasmic parasite spots). .. For the solubility assay, the solutions were maintained at 25 °C ( Software:Article Title: High-Complexity One-Pot Golden Gate Assembly. Article Snippet: NEB 10-beta Electrocompetent E. coli (New England Biolabs, cat. no. C3020K) or other suitable T7 host strain LB medium (Elbing & Brent, 2019) LB plate containing T7 phage plaques (see Basic Protocol 5) Phage dilution buffer (see recipe) PEG 8000 (Sigma-Aldrich, cat. no 89510) NaCl (Sigma-Aldrich, cat. no. 793566) Monarch HMW DNA Extraction Kit for Tissue (New England Biolabs, cat. no. T3060S) containing: Monarch HMW gDNA Tissue Lysis Buffer Proteinase K (molecular biology grade) Monarch Protein Separation Solution Monarch 2 ml Tubes Monarch DNA Capture Beads Monarch gDNA Wash Buffer Monarch Bead Retainers Monarch Collection Tubes II Monarch gDNA Elution Buffer II HPLC-grade isopropanol (Sigma-Aldrich, cat. no. 34863) Ligation Sequencing Kit (Oxford Nanopore Technologies, cat. no. SQL-LSK109) Native Barcoding Expansion (Oxford Nanopore Technologies, cat. no. EXP-NBD104 or EXP-NBD114) Adapter Mix II Expansion (Oxford Nanopore Technologies, cat. no. EXP-AMII001) NEB Blunt/TA Ligase Master Mix (New England Biolabs, cat. no. M0367) NEBNext Quick Ligation Reaction Buffer (New England Biolabs, cat. no. B6058) NEBNext Companion Module for Oxford Nanopore Technologies Ligation Sequencing (New England Biolabs, cat. no. E7180S) Agencourt AMPure XP beads (Beckman Coulter, cat. no. A63881) MinION Flow Cell (R9.4.1) (Oxford Nanopores Technologies, cat. no. FLO-MIN106D) Flow Cell Priming Kit (Oxford Nanopore Technologies, cat. no. EXP-FLP002) Sikkema et al. 31 of 47 Current Protocols 26911299, 2023, 9, D ow nloaded from https://currentprotocols.onlinelibrary.w iley.com /doi/10.1002/cpz1.882 by N at Prov Indonesia, W iley O nline L ibrary on [14/01/2024]. .. See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense Culture tube (VWR, cat. no. 10545-946) 37°C shaking incubator 250-ml Erlenmeyer flask (VWR, cat. no. 10536-914) 1.5-ml DNA LoBind tubes (Eppendorf, cat. no. 022431021) 50-ml centrifuge tubes (VWR, cat. no. 21008-940 or similar) Ligation:Article Title: High-Complexity One-Pot Golden Gate Assembly. Article Snippet: NEB 10-beta Electrocompetent E. coli (New England Biolabs, cat. no. C3020K) or other suitable T7 host strain LB medium (Elbing & Brent, 2019) LB plate containing T7 phage plaques (see Basic Protocol 5) Phage dilution buffer (see recipe) PEG 8000 (Sigma-Aldrich, cat. no 89510) NaCl (Sigma-Aldrich, cat. no. 793566) Monarch HMW DNA Extraction Kit for Tissue (New England Biolabs, cat. no. T3060S) containing: Monarch HMW gDNA Tissue Lysis Buffer Proteinase K (molecular biology grade) Monarch Protein Separation Solution Monarch 2 ml Tubes Monarch DNA Capture Beads Monarch gDNA Wash Buffer Monarch Bead Retainers Monarch Collection Tubes II Monarch gDNA Elution Buffer II HPLC-grade isopropanol (Sigma-Aldrich, cat. no. 34863) Ligation Sequencing Kit (Oxford Nanopore Technologies, cat. no. SQL-LSK109) Native Barcoding Expansion (Oxford Nanopore Technologies, cat. no. EXP-NBD104 or EXP-NBD114) Adapter Mix II Expansion (Oxford Nanopore Technologies, cat. no. EXP-AMII001) NEB Blunt/TA Ligase Master Mix (New England Biolabs, cat. no. M0367) NEBNext Quick Ligation Reaction Buffer (New England Biolabs, cat. no. B6058) NEBNext Companion Module for Oxford Nanopore Technologies Ligation Sequencing (New England Biolabs, cat. no. E7180S) Agencourt AMPure XP beads (Beckman Coulter, cat. no. A63881) MinION Flow Cell (R9.4.1) (Oxford Nanopores Technologies, cat. no. FLO-MIN106D) Flow Cell Priming Kit (Oxford Nanopore Technologies, cat. no. EXP-FLP002) Sikkema et al. 31 of 47 Current Protocols 26911299, 2023, 9, D ow nloaded from https://currentprotocols.onlinelibrary.w iley.com /doi/10.1002/cpz1.882 by N at Prov Indonesia, W iley O nline L ibrary on [14/01/2024]. .. See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense Culture tube (VWR, cat. no. 10545-946) 37°C shaking incubator 250-ml Erlenmeyer flask (VWR, cat. no. 10536-914) 1.5-ml DNA LoBind tubes (Eppendorf, cat. no. 022431021) 50-ml centrifuge tubes (VWR, cat. no. 21008-940 or similar) Sequencing:Article Title: High-Complexity One-Pot Golden Gate Assembly. Article Snippet: NEB 10-beta Electrocompetent E. coli (New England Biolabs, cat. no. C3020K) or other suitable T7 host strain LB medium (Elbing & Brent, 2019) LB plate containing T7 phage plaques (see Basic Protocol 5) Phage dilution buffer (see recipe) PEG 8000 (Sigma-Aldrich, cat. no 89510) NaCl (Sigma-Aldrich, cat. no. 793566) Monarch HMW DNA Extraction Kit for Tissue (New England Biolabs, cat. no. T3060S) containing: Monarch HMW gDNA Tissue Lysis Buffer Proteinase K (molecular biology grade) Monarch Protein Separation Solution Monarch 2 ml Tubes Monarch DNA Capture Beads Monarch gDNA Wash Buffer Monarch Bead Retainers Monarch Collection Tubes II Monarch gDNA Elution Buffer II HPLC-grade isopropanol (Sigma-Aldrich, cat. no. 34863) Ligation Sequencing Kit (Oxford Nanopore Technologies, cat. no. SQL-LSK109) Native Barcoding Expansion (Oxford Nanopore Technologies, cat. no. EXP-NBD104 or EXP-NBD114) Adapter Mix II Expansion (Oxford Nanopore Technologies, cat. no. EXP-AMII001) NEB Blunt/TA Ligase Master Mix (New England Biolabs, cat. no. M0367) NEBNext Quick Ligation Reaction Buffer (New England Biolabs, cat. no. B6058) NEBNext Companion Module for Oxford Nanopore Technologies Ligation Sequencing (New England Biolabs, cat. no. E7180S) Agencourt AMPure XP beads (Beckman Coulter, cat. no. A63881) MinION Flow Cell (R9.4.1) (Oxford Nanopores Technologies, cat. no. FLO-MIN106D) Flow Cell Priming Kit (Oxford Nanopore Technologies, cat. no. EXP-FLP002) Sikkema et al. 31 of 47 Current Protocols 26911299, 2023, 9, D ow nloaded from https://currentprotocols.onlinelibrary.w iley.com /doi/10.1002/cpz1.882 by N at Prov Indonesia, W iley O nline L ibrary on [14/01/2024]. .. See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense Culture tube (VWR, cat. no. 10545-946) 37°C shaking incubator 250-ml Erlenmeyer flask (VWR, cat. no. 10536-914) 1.5-ml DNA LoBind tubes (Eppendorf, cat. no. 022431021) 50-ml centrifuge tubes (VWR, cat. no. 21008-940 or similar) other:Article Title: Bio-orthogonal tuning of matrix properties during 3D cell culture to induce morphological and phenotypic changes. Article Snippet: Described herein is a protocol for producing a synthetic extracellular matrix that can be modified in situ during three-dimensional cell culture.. The hydrogel platform is established using modular building blocks employing bio-orthogonal tetrazine (Tz) ligation with slow (norbornene, Nb) and fast (trans-cyclooctene, TCO) dienophiles.. A cell-laden gel construct is created via the slow, off-stoichiometric Tz/Nb reaction. |